Theoretical Neuroscience Podcast

Latest Episodes:

On the population code in visual cortex - with Kenneth Harris - #26 Mar 29, 2025

Show notes

With modern electrical and optical measurement techniques, we can now measure neural activity in hundreds or thousands of neurons simultaneously. This allows for the investigation of population codes, that is, of how groups of neurons together encode information.

In 2019 today's guest published a seminal paper with collaborators at UCL in London where analysis of optophysiological data from 10.000 neurons in mouse visual cortex revealed an intriguing population code balancing the needs for efficient and robust coding.

We discuss the paper and (towards the end) also how new AI tools may be a game-changer for neuroscience data analysis.

On growing synthetic dendrites – with Hermann Cuntz - #25 Mar 01, 2025

Show notes

The observed variety of dendritic structures in the brains is striking. Why are they so different, and what determine the branching patterns?

Following the dictum "if you understand it, you can build it", the lab of the guest builds dendritic structures in a computer and explore the underlying principles.

Two key principles seem to be to minimize (i) the overall length of dendrites and (ii) the path length from the synapses to the soma.

On neuroscience foundation models - with Andreas Tolias - #24 Feb 01, 2025

Show notes

The term "foundation model" refers to machine learning models that are trained on vast datasets and can be applied to a wide range of situations. The large language model GPT-4 is an example.

The group of the guest has recently presented a foundation model for optophysiological responses in mouse visual cortex trained on recordings from 135.000 neurons in mice watching movies.

We discuss the design, validation, use of this and future neuroscience foundation models.

On human whole-brain models - with Viktor Jirsa - #23 Jan 04, 2025

Show notes

A holy grail of the multiscale approach for physical brain modelling is to link the different scales from molecules, via cells and local neural networks, up to whole-brain models.

The goal of the Virtual Brain Twin project, lead by today's guest, is to use personalized human whole-brain models to aid clinicians in treating brain ailments.

The podcast discusses how such models are presently made using neural field models, starting with neuron population dynamics rather than molecular dynamics.

On 40 years with the Hopfield network model - with Wulfram Gerstner - #22 Dec 07, 2024

Show notes

In 1982 John Hopfield published the paper "Neural networks and physical systems with emergent collective computational abilities" describing a simple network model functioning as an associative and content-addressable memory.

The paper started a new subfield in computational neuroscience and led to the influx of numerous theoretical scientists, in particular physicists, to the field.

The podcast guest wrote his PhD thesis on the model in the early 1990s, and we talk about the history and present impact of the model.

On models for short-term memory - with Pawel Herman - #21 Nov 09, 2024

Show notes

The leading theory for learning and memorization in the brain is that learning is provided by synaptic learning rules and memories stored in synaptic weights between neurons.

But this is for long-term memory. What about short-term, or working, memory where objects are kept in memory for only a few seconds?

The traditional theory held that here the mechanism is different, namely persistent firing of select neurons in areas such as prefrontal cortex. But this view is challenged by recent synapse-based models explored by today's guest and others.

On neuro-AI on the boat - part 2 of 2 - with Cristina Savin, Tim Vogels, Mikkel Lepperød, Paul Middlebrooks - #20 Oct 11, 2024

Show notes

In September Paul Middlebrooks, the producer of the podcast BrainInspired, and I were both on a neuro-AI workshop on a coast liner cruising the Norwegian fjords.

We decided to make two joint podcasts with some of the participants where we discuss the role of AI in neuroscience.

In this second part we discuss the topic with Cristina Savin and Tim Vogels and round off with a brief discussion with Mikkel Lepperød, the main organizer of the workshop, about what he learned from the workshop.

On neuro-AI on the boat - part 1 of 2 - with Ken Harris, Andreas Tolias, Mikkel Lepperød, Paul Middlebrooks - #19 Oct 08, 2024

Show notes

In September Paul Middlebrooks, the producer of the podcast BrainInspired, and I were both on a neuro-AI workshop on a coast liner cruising the Norwegian fjords.

We decided to make two joint podcasts with some of the participants where we discuss the role of AI in neuroscience.

In this first part we talk with Mikkel Lepperod, the main organizer about the goal of the workshop, and with Ken Harris and Andreas Tolias about how AI has affected their research neuroscientists and their thoughts about the future of neuro-AI.

On electric brain signals - solo episode - #18 Sep 15, 2024

Show notes

Most of what we have learned about the functioning of the living brain has come from extracellular electrical recordings, like the measurement of spikes, LFP, ECoG and EEG signals.

And most analysis of these recordings has been statistical, looking for correlations between the recorded signals and what the animal/human is doing or being exposed to.

However, starting with the neuron rather than the data, these electrical brain signals can also be computed from biophysics-based forward models, and this is topic of this podcast.

On dendritic function - with Yiota Poirazi - #17 Aug 17, 2024

Show notes

The most prominent visual characteristic of neurons is their dendrites.

Even more than 100 years after their first observation by Cajal, their function is not fully understood. Biophysical modeling based on cable theory is a key research tool for exploring putative functions, and today's guest is one the leading researchers in this field.

We talk about of passive and active dendrites, the kind of filtering of synaptic inputs they support, the key role of synapse placements, and how the inclusion of dendrites may facilitate AI.

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