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    Natural Sciences

    SquaMates

    A totally serious herpetological podcast

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    Latest Episodes:
    SquaMates Ep. 15: And now for something completely different Mar 08, 2020
    Show notes

    We’re back with Episode 15! In this Works in Froggress and Discussion episode, the Mates, Dr Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak, talk about what they’ve been up to since October 2019, and discuss the event of the year, the 9th World Congress of Herpetology in Dunedin, New Zealand.

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Episode Citations

    Ratsoavina, F.M., Scherz, M.D., Tolley, K.A., Raselimanana, A.P., Glaw, F. & Vences, M. (2019) A new species of Uroplatus (Gekkonidae) from Ankarana National Park, Madagascar, of remarkably high genetic divergence. Zootaxa, 4683(1):84–96. DOI: 10.11646/zootaxa.4683.1.4

    Rasolonjatovo, S.M., Scherz, M.D., Hutter, C.R., Glaw, F., Rakotoarison, A., Razafindraibe, J.H., Goodman, S.M., Raselimanana, A.P. & Vences, M. (2020) Sympatric lineages in the Mantidactylus ambreensis complex of Malagasy frogs originated allopatrically rather than by in-situ speciation. Molecular Phylogenetics and Evolution, 144:106700. DOI: 10.1016/j.ympev.2019.106700

    Prötzel, D., Scherz, M.D., Ratsoavina, F.M., Vences, M. & Glaw, F. (2020) Untangling the trees: Revision of the Calumma nasutum complex (Squamata: Chamaeleonidae). Vertebrate Zoology, 70(1):23–59. DOI: 10.26049/VZ70-1-2020-3

    Get the book about Joan Procter mentioned by Mark here!

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate • redbubble

    Gabriel Ugueto: website • twitter • instagram • facebook • redbubble

    Ethan Kocak: website • twitter • tumblr • facebook • patreon

    The post SquaMates Ep. 15: And now for something completely different first appeared on SquaMates.


    SquaMates Ep. 14: And Another Thing… Feb 20, 2020
    Show notes

    Dr Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak are back for a new start in 2020 and a small change to our episode format! In this Breaking Newts episode, we highlight important herpetological papers published since October 2019!

    Episode Citations

    Post, Y., Puschhof, J., Beumer, J., Kerkkamp, H.M., de Bakker, M.A.G., Slagboom, J., de Barbanson, B., Wevers, N.R., Spijkers, X.M., Olivier, T., Kazandjian, T.D., Ainsworth, S., Iglesias, C.L., van de Wetering, W.J., Heinz, M.C., van Ineveld, R.L., van Kleef, R.G.D.M., Begthel, H., Korving, J., Bar-Ephraim, Y.E., Getreuer, W., Rios, A.C., Westerink, R.H.S., Snippert, H.J.G., van Oudenaarden, A., Peters, P.J., Vonk, F.J., Kool, J., Richardson, M.K., Casewell, N.R. & Clevers, H. (2020) Snake Venom Gland Organoids. Cell, 180, 233–247.e21. 10.1016/j.cell.2019.11.038

    Garberoglio, F.F., Apesteguía, S., Simões, T.R., Palci, A., Gómez, R.O., Nydam, R.L., Larsson, H.C.E., Lee, M.S.Y. & Caldwell, M.W. (2019) New skulls and skeletons of the Cretaceous legged snake Najash, and the evolution of the modern snake body plan. Science Advances, 5, eaax5833. 10.1126/sciadv.aax5833

    Macrì, S., Savriama, Y., Khan, I. & Di-Poï, N. (2019) Comparative analysis of squamate brains unveils multi-level variation in cerebellar architecture associated with locomotor specialization. Nature Communications, 10, 5560. 10.1038/s41467-019-13405-w

    Čerňanský, A., Herrel, A., Kibii, J.M., Anderson, C.V., Boistel, R. & Lehmann, T. (2020) The only complete articulated early Miocene chameleon skull (Rusinga Island, Kenya) suggests an African origin for Madagascar’s endemic chameleons. Scientific Reports, 10, 109. 10.1038/s41598-019-57014-5

    Burbrink, F.T., Grazziotin, F.G., Pyron, R.A., Cundall, D., Donnellan, S., Irish, F., Keogh, J.S., Kraus, F., Murphy, R.W., Noonan, B., Raxworthy, C.J., Ruane, S., Lemmon, A.R., Lemmon, E.M. & Zaher, H. (2019) Interrogating genomic-scale data for Squamata (Lizards, Snakes, and Amphisbaenians) shows no support for key traditional morphological relationships. Systematic Biology, 10.1093/sysbio/syz062

    Fischer, E.K., Roland, A.B., Moskowitz, N.A., Vidoudez, C., Ranaivorazo, N., Tapia, E.E., Trauger, S.A., Vences, M., Coloma, L.A. & O’Connell, L.A. (2019) Mechanisms of convergent egg provisioning in poison frogs. Current Biology, 29, 4145–4151.e3. 10.1016/j.cub.2019.10.032

    Lind, A.L., Lai, Y.Y.Y., Mostovoy, Y., Holloway, A.K., Iannucci, A., Mak, A.C.Y., Fondi, M., Orlandini, V., Eckalbar, W.L., Milan, M., Rovatsos, M., Kichigin, I.G., Makunin, A.I., Johnson Pokorná, M., Altmanová, M., Trifonov, V.A., Schijlen, E., Kratochvíl, L., Fani, R., Velenský, P., Rehák, I., Patarnello, T., Jessop, T.S., Hicks, J.W., Ryder, O.A., Mendelson, J.R., Ciofi, C., Kwok, P.-Y., Pollard, K.S. & Bruneau, B.G. (2019) Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nature Ecology & Evolution, 3, 1241–1252. 10.1038/s41559-019-0945-8

    Suryamohan, K., Krishnankutty, S.P., Guillory, J., Jevit, M., Schröder, M.S., Wu, M., Kuriakose, B., Mathew, O.K., Perumal, R.C., Koludarov, I., Goldstein, L.D., Senger, K., Dixon, M.D., Velayutham, D., Vargas, D., Chaudhuri, S., Muraleedharan, M., Goel, R., Chen, Y.-J.J., Ratan, A., Liu, P., Faherty, B., de la Rosa, G., Shibata, H., Baca, M., Sagolla, M., Ziai, J., Wright, G.A., Vucic, D., Mohan, S., Antony, A., Stinson, J., Kirkpatrick, D.S., Hannoush, R.N., Durinck, S., Modrusan, Z., Stawiski, E.W., Wiley, K., Raudsepp, T., Kini, R.M., Zachariah, A. & Seshagiri, S. (2020) The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins. Nature Genetics, 52, 106-117. 10.1038/s41588-019-0559-8

    Li, J., Yu, H., Wang, W., Fu, C., Zhang, W., Han, F. & Wu, H. (2019) Genomic and transcriptomic insights into molecular basis of sexually dimorphic nuptial spines in Leptobrachium leishanense. Nature Communications, 10, 5551. 10.1038/s41467-019-13531-5

    Furness, A.I. & Capellini, I. (2019) The evolution of parental care diversity in amphibians. Nature Communications, 10, 4709. 10.1038/s41467-019-12608-5

    Perkins, R.D., Gamboa, J.R., Jonika, M.M. Lo, J., Shum, A., Adams, R. H. & Blackmon, H. (2019) A database of amphibian karyotypes. Chromosome Research 27:313. 10.1007/s10577-019-09613-1

    Shout-outs

    Eva Fischer: @evakfischer • Fischer lab website • Personal Website

    Lauren O’Connell: @alaurenoconnell • Stanford Laboratory of Organismal Biology

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate • redbubble

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 14: And Another Thing… first appeared on SquaMates.


    Squamates Ep. 13: Mostly Humbugs Nov 15, 2019
    Show notes

    We are the worst, but at least we have an Episode 13, unlike a certain podcast we know. In this long-delayed episode, it’s just two of your normal co-hosts, Dr Mark D. Scherz and Gabriel Ugueto, in a more laid-back, chatty format than the usual!

    In this thirteenth episode, the structure of the show is a bit different, but we do talk about biogeography and conservation of some geckos and frogs from Madagascar, how exciting we find turtles, and some really cool new science.

    Works in Frogress

    Mohan, A.V., Gehring, P.-S., Scherz, M.D., Glaw, F., Ratsoavina, F.M. & Vences, M. (2019) Comparative phylogeography and patterns of deep genetic differentiation of two gecko species, Paroedura gracilis and Phelsuma guttata, across north-eastern Madagascar. Salamandra, 55(3):211–220.

    Scherz, M.D., Glaw, F., Hutter, C.R., Bletz, M.C., Rakotoarison, A., Köhler, J. & Vences, M. (2019) Species complexes and the importance of Data Deficient classification in Red List assessments: the case of Hylobatrachus frogs. PLoS One, 14(8):e0219437. DOI: 10.1371/journal.pone.0219437 — for more information about this paper, see Mark’s article in The Conversation (short) and on his blog (long) about it

    Mark mentions this paper as well when talking about the former:

    Gehring, P.-S., Siarabi, S., Scherz, M.D., Ratsoavina, F.M., Rakotoarison, A., Glaw, F. & Vences, M. (2018) Genetic differentiation and species status of the large-bodied leaf-tailed geckos Uroplatus fimbriatus and U. giganteus. Salamandra, 54(2):132–146.

    and this paper when talking about the latter:

    Gehara, M., Crawford, A.J., Orrico, V.G.D., Rodríguez, A., Lötters, S., Fouquet, A., Barrientos, L.S., Brusquetti, F., De la Riva, I., Ernst, R., Urrutia, G.G., Glaw, F., Guayasamin, J.M., Hölting, M., Jansen, M., Kok, P.J.R., Kwet, A., Lingnau, R., Lyra, M., Moravec, J., Pombal, J.P., Jr., Rojas-Runjaic, F.J.M., Schulze, A., Señaris, J.C., Solé, M., Rodrigues, M.T., Twomey, E., Haddad, C.F.B., Vences, M. & Köhler, J. (2014) High levels of diversity uncovered in a widespread nominal taxon: continental phylogeography of the Neotropical tree frog Dendropsophus minutus. PLoS ONE, 9(9):e103958. DOI: 10.1371/journal.pone.0103958

    Some showcases of what Gabriel talked about:

    His ‘cheat-sheets’ to some American lizards:

    Image

    Image

    Jurassic taxa for his upcoming book:

    Follow-up

    Wollenberg Valero, C.K., Marshall, C.J., Bastiaans, E., Caccone, A., Camargo, A., Morando, M., Niemiller, L.M., Pabijan, M., Russello, A.M., Sinervo, B., Werneck, P.F., Sites, W.J., Wiens, J.J. & Steinfartz, S. (2019) Patterns, mechanisms and genetics of speciation in reptiles and amphibians. Genes, 10(9): DOI: 10.3390/genes10090646

    Rasys, A.M., Park, S., Ball, R.E., Alcala, A.J., Lauderdale, J.D. & Menke, D.B. (2019) CRISPR-Cas9 Gene Editing in Lizards Through Microinjection of Unfertilized Oocytes. Cell Reports, 28(9):2288–2292.e3. DOI: 10.1101/591446

    Breuil, M., Vuillaume, B., Schikorski, D., Krauss, U., Morton, M.N., Haynes, P., Daltry, J.C., Corry, E., Gaymes, G., Gaymes, J., Bech, N., Jelić, M. & Grandjean, F. (2019) A story of nasal horns: two new subspecies of Iguana Laurenti, 1768 (Squamata, Iguanidae) in Saint Lucia, St Vincent & the Grenadines, and Grenada (southern Lesser Antilles). Zootaxa, 4608(2):201–232. DOI: 10.11646/zootaxa.4608.2.1

    Breaking Newts

    Women Researching and Talking Herpetology

    The September 2019 issue of MDPI Diversity is packed with herpetology!

    Fischer, E.K., Roland, A.B., Moskowitz, N.A., Tapia, E.E., Summers, K., Coloma, L.A. & O’Connell, L.A. (2019) The neural basis of tadpole transport in poison frogs. Proceedings of the Royal Society B: Biological Sciences, 286(1907):20191084. DOI: 10.1098/rspb.2019.1084 — Mark said this was in Open Science but it was not

    Rovatsos, M., Farkačová, K., Altmanová, M., Johnson Pokorná, M. & Kratochvíl, L. (2019) The rise and fall of differentiated sex chromosomes in geckos. Molecular Ecology, 28(12):3042-3052. DOI: 10.1111/mec.15126

    Feiner, N. (2019) Evolutionary lability in Hox cluster structure and gene expression in Anolis lizards. Evolution Letters, 3(5):474–484. DOI: 10.1002/evl3.131 — check out the post on this article on Anole Annals!

    Skipwith, P.L., Bi, K. & Oliver, P.M. (2019) Relicts and radiations: Phylogenomics of an Australasian lizard clade with east Gondwanan origins (Gekkota: Diplodactyloidea). Molecular Phylogenetics and Evolution, 140:106589. DOI: 10.1016/j.ympev.2019.106589

    Watanabe, A., Fabre, A.-C., Felice, R.N., Maisano, J.A., Müller, J., Herrel, A. & Goswami, A. (2019) Ecomorphological diversification in squamates from conserved pattern of cranial integration. Proceedings of the national Academy of Sciences of the USA, 116(29):14688. DOI: 10.1073/pnas.1820967116

    Chaplin, K., Sumner, J., Hipsley, C.A. & Melville, J. (2019) An integrative approach using phylogenomics and high-resolution x-ray computed tomography for species delimitation in cryptic taxa. Systematic Biology: DOI: 10.1093/sysbio/syz048

    Shout-outs

    Common Descent Podcast: PodBean • Apple Podcasts • @CommDescentPC

    Eva Fischer: @evakfischer • Fischer lab website • Personal Website

    Lauren O’Connell: @alaurenoconnell • Stanford Laboratory of Organismal Biology

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate • redbubble

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post Squamates Ep. 13: Mostly Humbugs first appeared on SquaMates.


    SquaMates Ep. 12: So Long, and Tanks for all our Frogs Aug 08, 2019
    Show notes

    Here it is, Episode 12! In this episode, the Mates, Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak, have some hot takes on wasp taxonomy (wtf?) and lizard functional groups!

    In this twelfth episode, we talk sailing frogs, how fast you have to walk to find the most snakes, lizard skulls, and flying geckos, and have a somewhat impassioned discussion of wasp taxonomy and a reductionist approach to lizard functional grouping! Our #HERper is Dr. Meg Stewart, and our main discussion is about squamate cognition!

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Works in Froggress

    Rakotoarison, A., Scherz, M.D., Bletz, M.C., Razafindraibe, J.H., Glaw, F., Vences, M. (2019) Description of the lucky Cophyla (Microhylidae, Cophylinae), a new arboreal frog from Marojejy National Park in north-eastern Madagascar. Zootaxa, 4651(2):271–288. 10.11646/zootaxa.4651.2.4

    The British cover of Believe it or Snot, the third book in the Does it Fart? trilogy

    Breaking Newts

    Glaw, F., Hawlitschek, O., Glaw, K. & Vences, M. (2019) Integrative evidence confirms new endemic island frogs and transmarine dispersal of amphibians between Madagascar and Mayotte (Comoros archipelago). The Science of Nature, 106, 19. 10.1007/s00114-019-1618-9 — Mark’s blog post

    Meierotto, S., Sharkey, M.J., Janzen, D.H., Hallwachs, W., Hebert, P.D.N., Chapman, E.G. & Smith, M.A. (2019) A revolutionary protocol to describe understudied hyperdiverse taxa and overcome the taxonomic impediment. Deutsche Entomologische Zeitschrift, 66, 119–145. 10.3897/dez.66.34683

    Mark fucked up: he says in the episode that Alex Hall (@allopatry) said funding would be the taxonomic revolution, but it was actually said by Derek Hennen (@derekhennen)!

    Lardner, B., Yackel Adams, A. A., Savidge, J. A. & Reed, R. N. (in press) Optimizing walking pace to maximize snake detection rate: A visual encounter survey Experiment. Herpetologica. 10.1655/Herpetologica-D-18-00020.1

    Grismer, L.L., Wood, P.L.J., Grismer, J.L., Quah, E.S.H., Thy, N., Phimmachak, S., Sivongxay, N., Seateun, S., Stuart, B.L., Siler, C.B., Mulcahy, D.G., Anamza, T. & Brown, R.M. (2019) Geographic structure of genetic variation in the Parachute Gecko Ptychozoon lionotum Annandale, 1905 across Indochina and Sundaland with descriptions of three new species. Zootaxa, 4638, 151–198. 10.11646/zootaxa.4638.2.1

    Villa, A. & Delfino, M. (in press) A comparative atlas of the skull osteology of European lizards (Reptilia: Squamata). Zoological Journal of the Linnean Society, 10.1093/zoolinnean/zlz035

    Feiner, N. & Wood, N.J. (2019) Lizards possess the most complete tetrapod Hox gene repertoire despite pervasive structural changes in Hox clusters. Evolution & Development, 21, e12300. 10.1111/ede.12300

    Vidan, E., Novosolov, M., Bauer, A.M., Herrera, F.C., Chirio, L., de Campos Nogueira, C., Doan, T.M., Lewin, A., Meirte, D., Nagy, Z.T., Pincheira-Donoso, D., Tallowin, O.J.S., Torres Carvajal, O., Uetz, P., Wagner, P., Wang, Y., Belmaker, J. & Meiri, S. (in press) The global biogeography of lizard functional groups. Journal of Biogeography, 10.1111/jbi.13667

    This paper is based heavily on Meiri (2018) Global Ecology and Biogeography 27:1168 10.1111/geb.12773

    #HERper:

    Dr. Margaret ‘Meg’ Dickerson

    Obituary on Legacy.com

    ASIH Stewart Award

    Publications (via ResearchGate)

    Main Discussion:

    Szabo, B., Noble, D.W.A., Byrne, R.W., Tait, D.S. & Whiting, M.J. (2019) Precocial juvenile lizards show adult level learning and behavioural flexibility. Animal Behaviour, 154, 75–84. 10.1016/j.anbehav.2019.06.003

    Matsubara, S., Deeming, D.C. & Wilkinson, A. (2017) Cold-blooded cognition: new directions in reptile cognition. Current Opinion in Behavioral Sciences, 16, 126–130. 10.1016/j.cobeha.2017.06.006

    Wilkinson, A. & Huber, L. (2014) Cold-Blooded Cognition: Reptilian Cognitive Abilities in Vonk, J. & Shackelford, T. K. (eds.) The Oxford Handbook of Comparative Evolutionary Psychology. Oxford University Press, Oxford, UK. pp. 129–143. URL

    Shout-outs:

    Common Descent Podcast: PodBean • Apple Podcasts • @CommDescentPC

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 12: So Long, and Tanks for all our Frogs first appeared on SquaMates.


    SquaMates Ep. 11: Life, the Sphaerodactylidae, and Everything Jul 09, 2019
    Show notes

    We’re back for our belated anniversary episode, episode 11! In this episode, the Mates, Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak, talk about the hottest new research in herpetology since April 2019!

    In this eleventh episode, we talk about salamander feet, burrowing lizard eyes, and the incredible gecko family Sphaerodactylidae.

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Works in Froggress

    Mark’s three new papers:

    Scherz, M.D., Köhler, J., Vences, M., Glaw, F. (2019) A new yellow-toed Platypelis species (Anura, Microhylidae, Cophylinae) from the Maroantsetra region, northeastern Madagascar. Evolutionary Systematics, 3(1):75–83. DOI:10.3897/evolsyst.3.33417 [pdf] — this is the paper Mark mentioned that was soon to be published!

    Rakotoarison, A.*, Scherz, M.D.*, Bletz, M.C., Razafindraibe, J.H., Glaw, F. & Vences, M. (2019) Diversity, elevational variation, and phylogenetic origin of stump-toed frogs (Microhylidae: Cophylinae: Stumpffia) on the Marojejy massif, northern Madagascar. Salamandra, 55(2):115–123. [pdf]

    Köhler, J., Vences, M., Scherz, M.D. & Glaw, F. (2019) A new species of nocturnal gecko, genus Paroedura, from the karstic Tsingy de Bemaraha formation in western Madagascar. Salamandra, 55(2):73–81. [pdf]

    Dinosaurs commissioned of Gabriel by the Australian National Marine Museum

    Gabriel’s artwork in the BBC Science Focus Magazine

    The British cover of Believe it or Snot, the third book in the Does it Fart? trilogy

    Breaking Newts

    Baken EK, Adams DC (2019) Macroevolution of arboreality in salamanders. Ecology and Evolution 9(12): 7005–7016. doi:10.1002/ece3.5267

    Portik DM, Bell RC, Blackburn DC, Bauer AM, Barratt CD, Branch WR, Burger M, Channing A, Colston TJ, Conradie W, Dehling JM, Drewes RC, Ernst R, Greenbaum E, Gvoždík V, Harvey J, Hillers A, Hirschfeld M, Jongsma GFM, Kielgast J, Kouete MT, Lawson LP, Leaché AD, Loader SP, Lötters S, Meijden AVD, Menegon M, Müller S, Nagy ZT, Ofori-Boateng C, Ohler A, Papenfuss TJ, Rößler D, Sinsch U, Rödel M-O, Veith M, Vindum J, Zassi-Boulou A-G, McGuire JA (2019) Sexual dichromatism drives diversification within a major radiation of African amphibians. Systematic Biology doi:10.1093/sysbio/syz023

    Krohn AR, Diepeveen ET, Bi K, Rosenblum EB (2019) Local adaptation does not lead to genome-wide differentiation in lava flow lizards. Ecology and Evolution 9(12): 6810–6820. doi:10.1002/ece3.5231

    Shine R, Shine T, Goiran C (2019) Morphology, reproduction and diet of the greater sea snake, Hydrophis major (Elapidae, Hydrophiinae). Coral Reefs doi:10.1007/s00338-019-01833-5

    Yovanovich CAM, Pierotti MER, Rodrigues MT, Grant T (2019) A dune with a view: the eyes of a neotropical fossorial lizard. Frontiers in Zoology 16(1): 17. doi:10.1186/s12983-019-0320-2

    Liu Y, Day LB, Summers K, Burmeister SS (2019) A cognitive map in a poison frog. The Journal of Experimental Biology 222(11): jeb197467. doi:10.1242/jeb.197467

    Hu J, Askary AM, Thurman TJ, Spiller DA, Palmer TM, Pringle RM, Barrett RDH (2019) The epigenetic signature of colonizing new environments in Anolis lizards. Molecular Biology and Evolution doi:10.1093/molbev/msz133

    Baeckens S, Llusia D, García-Roa R, Martín J (2019) Lizard calls convey honest information on body size and bite performance: a role in predator deterrence? Behavioral Ecology and Sociobiology 73: 87. doi:10.1007/s00265-019-2695-7

    #HERper:

    Mary Cynthia Dickerson — 1866–1923

    Main Discussion:

    Gamble T, Bauer AM, Greenbaum E, Jackman TR (2007) Evidence for Gondwanan vicariance in an ancient clade of gecko lizards. Journal of Biogeography 35: 88–104. doi:10.1111/j.1365-2699.2007.01770.x

    Shout-outs:

    Tony Gamble: twitter • lab website

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 11: Life, the Sphaerodactylidae, and Everything first appeared on SquaMates.


    SquaMates Ep. 10: The Rhacodactylus at the End of the Universe May 09, 2019
    Show notes

    Belated and disorganised, but it is finally here! Episode ten, with the Mates, Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak, talking about the hottest new research in herpetology since March 2019!

    In this tenth episode, we talk about glowing frogs, diving snakes, twitter’s greatest HERpetologists, and New Caledonian geckos!

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Works in Frogress:

    Mark’s new paper on Mini mum, Mini scule, and Mini ature came out!

    Read Mark’s new paper describing Brookesia tedi

    Listen to Mark’s notes from the field on the Chameleon Breeder Podcast

    Breaking Newts:

    World Congress of Herpetology 2020

    SEH Herpetological Conference 2019

    Rasys AM, Park S, Ball RE, Alcala AJ, Lauderdale JD, Menke DB (2019) CRISPR-Cas9 Gene Editing in Lizards Through Microinjection of Unfertilized Oocytes. bioRxiv doi: 10.1101/591446

    Schield DR, Card DC, Hales NR, Perry BW, Pasquesi GM, Blackmon H, Adams RH, Corbin AB, Smith CF, Ramesh B, Demuth JP, Betrán E, Tollis M, Meik JM, Mackessy SP, Castoe TA (2019) The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes. Genome Research. doi: 10.1101/gr.240952.118

    Goutte S, Mason MJ, Antoniazzi MM, Jared C, Merle D, Cazes L, Toledo LF, el-Hafci H, Pallu S, Portier H, Schramm S, Gueriau P, Thoury M (2019) Intense bone fluorescence reveals hidden patterns in pumpkin toadlets. Scientific Reports 9(1): 5388. doi: 10.1038/s41598-019-41959-8 — follow Sandra on twitter!

    Rebouças R, Carollo AB, de Oliveira Freitas M, Lambertini C, dos Santos RMN, Toledo LF (2019) Is the conspicuous dorsal coloration of the Atlantic forest pumpkin toadlets aposematic? Salamandra 55(1): 39–47. [pdf]

    Gray RJ (2019) Biofluorescent lateral patterning on the mossy bushfrog (Philautus macroscelis): the first report of biofluorescence in a rhacophorid frog. Herpetology Notes 12(363–364). [pdf] — Mark was wrong, this was the rhacophorid frog he was thinking of

    Vági B, Végvári Z, Liker A, Freckleton Robert P, Székely T (2019) Parental care and the evolution of terrestriality in frogs. Proceedings of the Royal Society B 286(1900): 20182737. doi: 10.1098/rspb.2018.2737

    Shine R (1979) Sexual Selection and Sexual Dimorphism in the Amphibia. Copeia 1979(2): 297–306. — this is the paper Mark mentioned about reasons that male frogs sometimes get larger than females

    Weinell JL, Branch WR, Colston TJ, Jackman TR, Kuhn A, Conradie W, Bauer AM (2019) A species-level phylogeny of Trachylepis (Scincidae: Mabuyinae) provides insight into their reproductive mode evolution. Molecular Phylogenetics and Evolution 136: 183-195. doi: 10.1016/j.ympev.2019.04.002

    Pinto BJ, Card DC, Castoe TA, Diaz Jr RE, Nielsen SV, Trainor PA, Gamble T (2019) The transcriptome of the veiled chameleon (Chamaeleo calyptratus): A resource for studying the evolution and development of vertebrates. Developmental Dynamics doi: 10.1002/dvdy.20

    Crowe-Riddell JM, D’Anastasi BR, Nankivell JH, Rasmussen AR, Sanders KL (in press) First records of sea snakes (Elapidae: Hydrophiinae) diving to the mesopelagic zone (>200 m). Austral Ecology doi: 10.1111/aec.12717

    #HERper:

    @HellbenderHecht — Kirsten Hecht
    @ToadallyPriya — Priya Nanjappa
    @Afro_herper — Earyn McGee
    @kwren88 — Karen Lips
    @jodirowley — Jodi Rowley
    @amphibs — Katy Greenwald
    @anatinmyshoe — Anat Belasen
    @herpomania — Sneha Dharwadkar
    @abslawson — Abby Lawson
    @HerpetALLogy — awesome herpers

    Main discussion references:

    Bauer AM, Jackman TR, Sadlier RA, Whitaker AH (2012) Revision of the giant geckos of New Caledonia (Reptilia: Diplodactylidae: Rhacodactylus). Zootaxa 3404(1): 1–52. doi: 10.11646/zootaxa.3404.1.1

    Shout-outs!

    Darren Naish: @tetzoo

    Sandra Goutte: @sandra_goutte

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 10: The Rhacodactylus at the End of the Universe first appeared on SquaMates.


    SquaMates Ep. 9: The Herpetologist’s Guide to the Galaxy Mar 25, 2019
    Show notes

    What? Another episode? So soon after the last? yes indeed! Episode nine is here, with the Mates, Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak, talking about the hottest new research in herpetology since December 2018!

    In this ninth episode, we talk about Eleutherodactylus, yellow anacondas, painting with snake pee, and blind snakes in a great deal of detail! Our featured #HERper is Joan Beauchamp Procter, a visionary woman of the early 20th century!

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Missed Snakes/Follow-up:

    Sherratt, E., Coutts, F.J., Rasmussen, A.R. & Sanders, K.L. (in press) Vertebral evolution and ontogenetic allometry: The developmental basis of extreme body shape divergence in microcephalic sea snakes. Evolution & Development. Evolution and Development, 1–10. 10.1111/ede.12284

    Works in Frogress:

    Mark has submitted his thesis!!! With cover artwork done by Gabriel.

    Gabriel’s rendition of Tyrannosaurus rex!

    Ethan received his amazing new acquisitions: two species of caecilians!

    Breaking Newts:

    Marshall JC, Bastiaans E, Caccone A, Camargo A, Morando M, Niemiller ML, Pabijan M, Russello MA, Sinervo B, Sites, Jr. JW, Vences M, Werneck FP, Wollenberg Valero KC, Steinfartz S. 2018. Mechanisms of speciation in reptiles and amphibians: a synopsis. PeerJ Preprints 6, e27279v1 10.7287/peerj.preprints.27279v1

    Cunningham, A.A., Smith, F., McKinley, T.J., Perkins, M.W., Fitzpatrick, L.D., Wright, O.N. & Lawson, B. (2019) Apparent absence of Batrachochytrium salamandrivorans in wild urodeles in the United Kingdom. Scientific Reports, 9, 2831. 10.1038/s41598-019-39338-4

    Fitzpatrick, L.D., Pasmans, F., Martel, A. & Cunningham, A.A. (2018) Epidemiological tracing of Batrachochytrium salamandrivorans identifies widespread infection and associated mortalities in private amphibian collections. Scientific Reports, 8, 13845. 10.1038/s41598-018-31800-z

    Kriss, D., Howe, E., Levinson, J., Rizzo, A., Carò, F. & DeLeonardis, L. (2018) A material and technical study of Paracas painted ceramics. Antiquity, 92, 1492–1510. 10.15184/aqy.2018.164

    Camera, B.F., Miranda, E.B.P., Ribeiro, R.P., Barros, M., Draque, J., Waller, T., Micucci, P.A., Dambros, C.S. & Strüssmann, C. (2019) Historical assumptions about the predation patterns of yellow anacondas (Eunectes notaeus): are they infrequent feeders? Journal of Herpetology, 53, 47–52. 10.1670/18-089

    Dugo-Cota, Á., Vilà, C., Rodríguez, A. & Gonzalez-Voyer, A. (in press) Ecomorphological convergence in Eleutherodactylus frogs: a case of replicate radiations in the Caribbean. Ecology Letters. 10.1111/ele.13246

    Frishkoff, L.O., Gabot, E., Sandler, G., Marte, C. & Mahler, D.L. (in press) Elevation shapes the reassembly of Anthropocene lizard communities. Nature Ecology & Evolution. 10.1038/s41559-019-0819-0

    Kueneman, J.G., Bletz, M.C., McKenzie, V.J., Becker, C.G., Joseph, M.B., Abarca, J.G., Archer, H., Arellano, A.L., Bataille, A., Becker, M., Belden, L.K., Crottini, A., Geffers, R., Haddad, C.F.B., Harris, R.N., Holden, W.M., Hughey, M., Jarek, M., Kearns, P.J., Kerby, J.L., Kielgast, J., Kurabayashi, A., Longo, A.V., Loudon, A., Medina, D., Nuñez, J.J., Perl, R.G.B., Pinto-Tomás, A., Rabemananjara, F.C.E., Rebollar, E.A., Rodríguez, A., Rollins-Smith, L., Stevenson, R., Tebbe, C.C., Vargas Asensio, G., Waldman, B., Walke, J.B., Whitfield, S.M., Zamudio, K.R., Zúñiga Chaves, I., Woodhams, D.C. & Vences, M. (2019) Community richness of amphibian skin bacteria correlates with bioclimate at the global scale. Nature Ecology & Evolution, 3, 381–389. 10.1038/s41559-019-0798-1

    Measey, J., Basson, A., Rebelo, A.D., Nunes, A.L., Vimercati, G., Louw, M. & Mohanty, N.P. (2019) Why have a pet amphibian? Insights from YouTube. Frontiers in Ecology and Evolution, 7, 52. 10.3389/fevo.2019.00052

    #HERper: Joan Beauchamp Procter FZS FLS

    Read about Joan on Wikipedia

    A lovely article on Joan by the Linnean Society

    An article on Joan by the Zoological Society of London

    An obituary of Joan Procter was published in Nature by G. A. Boulenger

    Main discussion references:

    Miralles, A., Marin, J., Markus, D., Herrel, A., Hedges, S.B. & Vidal, N. (2018) Molecular evidence for the paraphyly of Scolecophidia and its evolutionary implications. Journal of Evolutionary Biology, 31, 1782–1793. 10.1111/jeb.13373

    Matsubara, K., Kumazawa, Y., Ota, H., Nishida, C. & Matsuda, Y. (2019) Karyotype analysis of four blind snake species (Reptilia: Squamata: Scolecophidia) and karyotypic changes in Serpentes. Cytogenetic and Genome Research, 157, 91–99. 10.1159/000496554

    Chretien, J., Wang-Claypool, C.Y., Glaw, F. & Scherz, M.D. (2019) The bizarre skull of Xenotyphlops sheds light on synapomorphies of Typhlopoidea. Journal of Anatomy, Early View. DOI: 10.1111/joa.12952 [Request PDF]

    The crazy skull of Xenotyphlops

    Mizuno, T. & Kojima, Y. (2015) A blindsnake that decapitates its termite prey. Journal of Zoology, 297, 220–224. 10.1111/jzo.12268

    Kley, N.J. (2001) Prey transport mechanisms in blindsnakes and the evolution of unilateral feeding systems in snakes. American Zoologist, 41, 1321–1337. 10.1093/icb/41.6.1321

    A selection of skulls of species of the genera Xenotyphlops, Indotyphlops, and Madatyphlops

    Kley, N.J. (2006) Morphology of the lower jaw and suspensorium in the Texas blindsnake, Leptotyphlops dulcis (Scolecophidia: Leptotyphlopidae). Journal of Morphology, 267, 494–515. 10.1002/jmor.10414

    Vidal, N., Marin, J., Morini, M., Donnellan, S., Branch, W.R., Thomas, R., Vences, M., Wynn, A., Cruaud, C. & Hedges, S.B. (2010) Blindsnake evolutionary tree reveals long history on Gondwana. Biology Letters, 6, 558–561. 10.1098/rsbl.2010.0220

    Kraus, F. (2017) New species of blindsnakes (Squamata: Gerrhopilidae) from the offshore islands of Papua New Guinea. Zootaxa, 4299, 75–94. 10.11646/zootaxa.4299.1.3

    Cundall, D. & Irish, F.J. (2008) The snake skull. In: Gans, C., Gaunt, A.S. & Adler, K. (Eds.) Morphology H: The Skull of Lepidosauria. Society for the Study of Amphibians and Reptiles, Ithaca, New York, pp. 349–692. — access the chapter here.

    Shout-outs!

    Emma Sherratt: @DrEmSherratt

    Darren Naish: @tetzoo

    Lorenzo Senici: @crazy.snakeman

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 9: The Herpetologist’s Guide to the Galaxy first appeared on SquaMates.


    SquaMates Ep. 8: The Last Anole Mar 15, 2019
    Show notes

    After a work-frenzied hiatus, the SquaMates are back with an eighth episode! And it’s a special episode devoted to discussing the recent Anolis Newsletter! The show is hosted by Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak, and we are joined by a special guest host, Dr. James T. Stroud!

    In this eighth episode, we fail to talk about anything but the newsletter, but it is packed with fun anecdotes and amazing observations—there should be enough entertainment for everyone!

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Works in Frogress:

    Mark’s newest papers:

    Scherz, M.D., Köhler, J., Rakotoarison, A., Glaw, F. & Vences, M. (2019) A new dwarf chameleon, genus Brookesia, from the Marojejy massif in northern Madagascar. Zoosystematics and Evolution, 95, 95–106. DOI: 10.3897/zse.95.32818 [pdf]

    The crazy skull of Xenotyphlops

    Chretien, J., Wang-Claypool, C.Y., Glaw, F. & Scherz, M.D. (2019) The bizarre skull of Xenotyphlops sheds light on synapomorphies of Typhlopoidea. Journal of Anatomy, Early View. DOI: 10.1111/joa.12952 [Request PDF]

    Ratsoavina, F.M., Raselimanana, A.P., Scherz, M.D., Rakotoarison, A., Glaw, F. & Vences, M. (2019) Finaritra! A new leaf-tailed gecko (Uroplatus) species from Marojejy National Park in north-eastern Madagascar. Zootaxa, 4545, 563–577. DOI: 10.11646/zootaxa.4545.4.7 [Request PDF]

    Gabriel

    Check out this amazing illustration by Gabriel that Mark commissioned for his PhD thesis cover:

    Ethan will be illustrating the new book in the Does it Fart? series!

    James’ newest papers

    Mothes, C.C., Stroud, J.T., Clements, S.L., Searcy, C.A. (2019) Evaluating the ability of an Ecological Niche Model to accurately predict biotic invasions using South Florida’s exotic lizard community. Journal of Biogeography [PDF]

    Stroud, J.T., Colom, M.*, Ferrer, P.*, Palermo, N.*, Vargas, V.*, Cavallini, M.*, Lopez, J.*, Jones, I. (2019) Behavioral shifts with urbanization may facilitate biological invasion of a widespread lizard. Urban Ecosystems [PDF]

    Stroud, J.T. (2019) Using introduced anoles as natural experiments in ecology and evolution. Anolis Newsletter VII, p. 242-260. Eds. Stroud, J.T., Geneva, A.J., Losos, J.B. Washington University, St. Louis MO [PDF]

    Stroud, J.T. (2019) Thoughts on the ecology and evolution of anoles: insights from 5 years of meandering strolls. Anolis Newsletter VII, p. 261-274. Eds. Stroud, J.T., Geneva, A.J., Losos, J.B. Washington University, St. Louis MO. [PDF]

    Main discussion references:

    Click here to access the amazing Anolis Newsletter! 323 pages of anole-y goodness!

    Prötzel, D., Heß, M., Scherz, M.D., Schwager, M., van’t Padje, A. & Glaw, F. (2018) Widespread bone-based fluorescence in chameleons. Scientific Reports, 8:698. DOI: 10.1038/s41598-017-19070-7 [pdf]

    Note: @ 53:25 Mark accidentally misspeaks and said ‘the family Dactyloa’ instead of ‘Dactyloidae’. Five days in the taxonomic penitence chamber!

    Shout-outs!

    Darren Naish: @tetzoo

    Jonathan Losos: @jlosos

    Anthony Geneva: @AnthonyGeneva

    Yasel Alfonso: @Yasel_Alfonso

    Tony Gamble: @Tony_Gamble1

    Colin Donihue: @ColinDonihue

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    James T. Stroud: website • twitter • anole annals twitter • Anole Annals blog

    The post SquaMates Ep. 8: The Last Anole first appeared on SquaMates.


    SquaMates Ep. 7: The Frog Awakens Dec 22, 2018
    Show notes

    The seventh episode of the SquaMates podcast—more amazing news, including five new herp genomes and a new siren, and a discussion that focusses on taxonomy! The show is hosted by Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak.

    In this seventh episode, we talk about a selection of new and newsworthy papers, including a new siren, five new reptile genomes (Lonesome George and the high-quality tegu genome!), and lizards in the Andes. Our main discussion is all about taxonomy, which we have a lot of strong opinions about. Our #HERper is the amazing Dr. Helen Beulah Thompson Gaige, an instrumental woman in the establishment of the American Society for Ichthyology and Herpetology!

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Works in Frogress:

    Nothing to report for this episode! We are all working hard as always, but have nothing to show for this month. Tragic.

    Breaking Newts References:

    Graham, S.P., Kline, R., Steen, D.A. & Kelehear, C. (2018) Description of an extant salamander from the Gulf Coastal Plain of North America: The Reticulated Siren, Siren reticulata. 13, e0207460.

    Esquerré D, Brennan IG, Catullo RA, Torres-Pérez F, Keogh JS (in press) How mountains shape biodiversity: the role of the Andes in biogeography, diversification and reproductive biology in South America’s most species rich lizard radiation (Squamata: Liolaemidae). Evolution. 10.1111/evo.13657

    Kolora, S.R.R., Weigert, A., Saffari, A., Kehr, S., Costa, M.B.W., Spröer, C., Indrischek, H., Chintalapati, M., Lohse, K., Doose, G., Overmann, J., Bunk, B., Bleidorn, C., Grimm-Seyfarth, A., Henle, K., Nowick, K., Faria, R., Stadler, P.F. & Schlegel, M. (in press) Divergent evolution in the genomes of closely-related lacertids, Lacerta viridis and L. bilineata and implications for speciation. GigaScience, giy160. 10.1093/gigascience/giy160

    Quesada, V., Freitas-Rodríguez, S., Miller, J., Pérez-Silva, J.G., Jiang, Z.-F., Tapia, W., Santiago-Fernández, O., Campos-Iglesias, D., Kuderna, L.F., Quinzin, M., Álvarez, M.G., Carrero, D., Beheregaray, L.B., Gibbs, J.P., Chiari, Y., Glaberman, S., Ciofi, C., Araujo-Voces, M., Myoral, P., Arango, J.R., Tamargo-Gómez, I., Roiz-Valle, D., Pascual-Torner, M., Evans, B.R., Edwards, D.L., Garrick, R.C., Russello, M.A., Poulakakis, N., Gaughran, S.J., Rueda, D.O., Bretones, G., Marquès-Bonet, T., White, K.P., Caccone, A. & López-Otín, C. (in press) Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution.

    Roscito, J.G., Sameith, K., Pippel, M., Francoijs, K.-J., Winkler, S., Dahl, A., Papoutsoglou, G., Myers, G. & Hiller, M. (in press) The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly. GigaScience, giy141. 10.1093/gigascience/giy141

    Roscito, J.G., Sameith, K., Parra, G., Langer, B.E., Petzold, A., Moebius, C., Bickle, M., Rodrigues, M.T. & Hiller, M. (2018) Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution. Nature Communications, 9, 4737. 10.1038/s41467-018-07122-z

    Bergmann, P.J. & Morinaga, G. (in press) The convergent evolution of snake-like forms by divergent evolutionary pathways in squamate reptiles. Evolution. 10.1111/evo.13651

    Ali, J.R. & Meiri, S. (in press) Biodiversity growth on the volcanic ocean islands and the roles of in situ cladogenesis and immigration: case with the reptiles. Ecography. 10.1111/ecog.04024

    Yuan, Z.-Y., Zhang, B.-L., Raxworthy, C.J., Weisrock, D.W., Hime, P.M., Jin, J.-Q., Lemmon, E.M., Lemmon, A.R., Holland, S.D., Kortyna, M.L., Zhou, W.-W., Peng, M.-S., Che, J. & Prendini, E. (2018) Natatanuran frogs used the Indian Plate to step-stone disperse and radiate across the Indian Ocean. National Science Review, 0, 1–5. 10.1093/nsr/nwy092

    Correia, L.L., Nunes, P.M.S., Gamble, T., Maciel, A.O., Marques-Souza, S., Fouquet, A., Rodrigues, M.T. & Mott, T. (2018) A new species of Brasilotyphlus (Gymnophiona: Siphonopidae) and a contribution to the knowledge of the relationship between Microcaecilia and Brasilotyphlus. Zootaxa, 4527, 186–196.

    Campbell, J.A., Smith, E.N. & Hall, A.S. (2018) Caudals and calyces: The curious case of a consumed Chiapan colubroid. Journal of Herpetology, 52, 458–471. 10.1670/18-042

    #HERper

    Dr. Helen Beulah Thompson Gaige

    Dr. Gaige on Wikipedia

    Research career profile on list of Scientific and Common names of herps of North America

    Parenti, L.R. & Wake, M.H. (2016) Evolution of the role of women in the American Society of Ichthyologists and Herpetologists. Copeia, 104, 594–601. 10.1643/OT-16-427

    Ruthven, A.G. (1936) Helen Thompson Gaige. Herpetologica, 1, 1–3.

    Main discussion: Taxonomy

    Questions by:

    Anna Davison — @amdecology

    Mike Itgen — @itgenm

    John Haas — @neotropical99

    Charles — @IncogPollywog

    Patrick Hennessey — @thepatrick_h

    Ana C. Afonso Silva —@anacatarinaas

    Owen Davies —@DrOwenDavies

    Further reading:

    biopat.org

    Taxonomic vandalism and the Raymond Hoser problem—article by Darren Naish (@tetzoo)

    Kaiser, H., Crother, B.I., Kelly, C.M.R., Luiselli, L., O’Shea, M., Ota, H., Passos, P., Schleip, W.D. & Wüster, W. (2013) Best practices: in the 21st century, taxonomic decisions in herpetology are acceptable only when supported by a body of evidence and published via peer-review. Herpetological Review, 44, 8–23.

    Hawlitschek, O., Nagy, Z.T. & Glaw, F. (2012) Island evolution and systematic revision of Comoran snakes: Why and when subspecies still make sense. PLoS One, 7, e42970.

    Scherz, M.D., Vences, M., Rakotoarison, A., Andreone, F., Köhler, J., Glaw, F. & Crottini, A. (2016) Reconciling molecular phylogeny, morphological divergence and classification of Madagascan narrow-mouthed frogs (Amphibia: Microhylidae). Molecular Phylogenetics and Evolution, 100, 372–381. 10.1016/j.ympev.2016.04.019

    Peloso, P.L.V., Raxworthy, C.J., Wheeler, W.C. & Frost, D.R. (2017) Nomenclatural stability does not justify recognition of paraphyletic taxa: A response to Scherz et al. (2016). Molecular Phylogenetics and Evolution, 111, 56–64. 10.1016/j.ympev.2017.03.016

    Scherz, M.D., Vences, M., Rakotoarison, A., Andreone, F., Köhler, J., Glaw, F. & Crottini, A. (2017) Lumping or splitting in the Cophylinae (Anura: Microhylidae) and the need for a parsimony of taxonomic changes: a response to Peloso et al. (2017). Salamandra, 53, 479–483.

    Prötzel, D., Vences, M., Scherz, M.D., Vieites, D.R. & Glaw, F. (2017) Splitting and lumping: An integrative taxonomic assessment of Malagasy chameleons in the Calumma guibei complex results in the new species C. gehringi sp. nov. Vertebrate Zoology, 67, 231–249.

    The Phylocode—Mike Keesey (@tmkeesey) rumours of updates on this note coming next year

    Hawlitschek, O., Scherz, M.D., Ruthensteiner, B., Crottini, A. & Glaw, F. (2018) Computational molecular species delimitation and taxonomic revision of the gecko genus Ebenavia Boettger, 1878. The Science of Nature, 105, 49. 10.1007/s00114-018-1574-9

    Note: The lineages of Ebenavia are actually between 5 and 15 Ma old. The dated phylogeny is in:

    Hawlitschek, O., Toussaint, E.F.A., Gehring, P.-S., Ratsoavina, F.M., Cole, N., Crottini, A., Nopper, J., Lam, A.W., Vences, M. & Glaw, F. (2016) Gecko phylogeography in the Western Indian Ocean region: the oldest clade of Ebenavia inunguis lives on the youngest island. Journal of Biogeography, 44, 409–420. 10.1111/jbi.12912

    Bush, F.M. (1959) Foods of some Kentucky herptiles. Herpetologica, 15, 73–77.—friends don’t let friends use the term ‘herptile’

    Shout-outs!

    Dr. David Steen — @AlongsideWild. Alongsidewildlife grants!

    Dr. Julian Roscito — @juroscito

    Dr. Michael Hiller — @hillermich

    Dr. Alex Hall — @allopatry

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 7: The Frog Awakens first appeared on SquaMates.


    SquaMates Ep. 6: Return of the ‘Anoli’ Nov 22, 2018
    Show notes

    The sixth episode of the SquaMates podcast—featuring some amazing new stories, including new iguanas and crocodiles, high-elevation herps, and some spectacular sea serpents! The show is hosted by Mark D. Scherz, Gabriel Ugueto, and Ethan Kocak.

    In this sixth episode, we talk about the many newsworthy papers published in the last month, from complex genomic modelling to some really amazing new species, including one crocodile that is new, and one that is not! Our main discussion is about sea snakes, their diversity and specialisations. Our #HERper is Grace Olive Wiley, a controversial but amazing herper of history.

    Episode notes sometimes get clipped on your device or by your podcast provider; for full (extensive) notes (and references), go to http://www.squamatespod.com

    Works in Frogress:

    Prötzel, D., Lambert, S.M., Andrianasolo, G.T., Hutter, C.R., Cobb, K.A., Scherz, M.D. & Glaw, F. (2018) The smallest ‘true chameleon’ from Madagascar: a new, distinctly colored species of the Calumma boettgeri complex (Squamata, Chamaeleonidae). Zoosystematics and Evolution, 94, 409–423. 10.3897/zse.94.27305

    Scherz, M.D., Glaw, F., Rakotoarison, A., Wagler, M. & Vences, M. (2018) Polymorphism and synonymy of Brookesia antakarana and B. ambreensis, leaf chameleons from Montagne d’Ambre in north Madagascar. Salamandra, 54, 259–268.

    Hutter, C.R., Andriampenomanana, Z.F., Razafindraibe, J., Rakotoarison, A. & Scherz, M.D. (2018) New dietary data from Compsophis and Alluaudina species (Squamata: Lamprophiidae: Pseudoxyrhophiinae), and implications for their dietary complexity and evolution. Journal of Natural History, 52, 2497–2510. 10.1080/00222933.2018.1543732

    https://www.newtist.com/

    Gabriel’s interview with Dave Hone

    How dinosaurs are brought to life—through art (interview with Gabriel)

    Breaking Newts References:

    Barrow, L.N., Lemmon, A.R. & Lemmon, E.M. (2018) Targeted Sampling and Target Capture: Assessing Phylogeographic Concordance with Genome-wide Data. Systematic Biology, syy021.

    Breuil, M., Vuillaume, B., Schikorski, D., Krauss, U., Morton, M., Haynes, P., Daltry, J., Corry, E., Gaymes, G., Gaymes, J., Bech, N., Jesic, M. & Grandjean, F. (2018) A story of nasal horns: A new species of Iguana Laurenti, 1768 (Squamata, Iguanidae) in Saint Lucia, St Vincent & the Grenadines, and Grenada (Southern Lesser Antilles) and its implications for the taxonomy of the genus Iguana. bioRxiv. 10.1101/466128

    note: Iguana delicatissima lives in sympatry with introduced populations of Iguana… not native populations of the new Iguana.

    Engelbrecht, H.M., Branch, W.R., Greenbaum, E., Alexander, G.J., Jackson, K., Burger, M., Conradie, W., Kusamba, C., Zassi-Boulou, A.-G. & Tolley, K.A. (2019) Diversifying into the branches: Species boundaries in African green and bush snakes, Philothamnus (Serpentes: Colubridae). Molecular Phylogenetics and Evolution, 130, 357–365. 10.1016/j.ympev.2018.10.023

    Liu, J., Guo, X., Chen, D., Li, J., Yue, B. & Zeng, X. (2019) Diversification and historical demography of the rapid racerunner (Eremias velox) in relation to geological history and Pleistocene climatic oscillations in arid Central Asia. Molecular Phylogenetics and Evolution, 130, 244–258. 10.1016/j.ympev.2018.10.029

    Milián-García, Y., Russello, M.A., Castellanos-Labarcena, J., Cichon, M., Kumar, V., Espinosa, G., Rossi, N., Mazzotti, F., Hekkala, E., Amato, G. & Janke, A. (2018) Genetic evidence supports a distinct lineage of American crocodile (Crocodylus acutus) in the Greater Antilles. PeerJ, 6, e5836. 10.7717/peerj.5836

    Myers, E.A., Bryson, R.W., Hansen, R.W., Aardema, M.L., Lazcano, D. & Burbrink, F.T. (2018) Exploring Chihuahuan Desert diversification in the gray-banded kingsnake, Lampropeltis alterna (Serpentes: Colubridae). Molecular Phylogenetics and Evolution. 10.1016/j.ympev.2018.10.031

    Prates, I., Penna, A., Rodrigues, M.T. & Carnaval, A.C. (in press) Local adaptation in mainland anole lizards: Integrating population history and genome–environment associations. Ecology and Evolution. 10.1002/ece3.4650

    Ramm, T., Cantalapiedra, J.L., Wagner, P., Penner, J., Rödel, M.-O. & Müller, J. (2018) Divergent trends in functional and phylogenetic structure in reptile communities across Africa. Nature Communications, 9, 4697. 10.1038/s41467-018-07107-y

    Shirley, M.H., Carr, A.N., Nestler, J.H., Vliet, K.A. & Brochu, C.A. (2018) Systematic revision of the living African Slender-snouted Crocodiles (Mecistops Gray, 1844). Zootaxa, 4504, 151–193.

    Sun, Y.-B., Fu, T.-T., Jin, J.-Q., Murphy, R.W., Hillis, D.M., Zhang, Y.-P. & Che, J. (2018) Species groups distributed across elevational gradients reveal convergent and continuous genetic adaptation to high elevations. Proceedings of the National Academy of Sciences, 115, E10634–E10641. 10.1073/pnas.1813593115

    Gnecchi-Ruscone, G.A., Abondio, P., De Fanti, S., Sarno, S., Sherpa, M.G., Sherpa, P.T., Marinelli, G., Natali, L., Di Marcello, M., Peluzzi, D., Luiselli, D., Pettener, D. & Sazzini, M. (2018) Evidence of polygenic adaptation to high altitude from Tibetan and Sherpa genomes. Genome Biology and Evolution, 10, 2919–2930. 10.1093/gbe/evy233

    Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B.M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., Ni, P., Wang, B., Ou, X., Huasang, Luosang, J., Cuo, Z.X.P., Li, K., Gao, G., Yin, Y., Wang, W., Zhang, X., Xu, X., Yang, H., Li, Y., Wang, J., Wang, J. & Nielsen, R. (2014) Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA. Nature, 512, 194. 10.1038/nature13408

    Episode 4, on Thermophis

    Torres-Carvajal, O., Echevarría, L.Y., Lobos, S.E., Venegas, P.J. & Kok, P.J.R. (2019) Phylogeny, diversity and biogeography of Neotropical sipo snakes (Serpentes: Colubrinae: Chironius). Molecular Phylogenetics and Evolution, 130, 315–329. 10.1016/j.ympev.2018.10.022

    Addtional resources:

    http://www.timetree.org/

    #HERper

    Wikipedia Page about Grace Olive Wiley

    Main discussion: Sea Snakes

    Listen to this podcast interview with Blanche D’Anastasi — follow her @SeaSnakeBlanche

    Also follow Jenna C. Rowe-Riddell: @jcroweriddell

    Udyawer, V., Barnes, P., Bonnet, X., Brischoux, F., Crowe-Riddell, J.M., D’Anastasi, B., Fry, B.G., Gillett, A., Goiran, C., Guinea, M.L., Heatwole, H., Heupel, M.R., Hourston, M., Kangas, M., Kendrick, A., Koefoed, I., Lillywhite, H.B., Lobo, A.S., Lukoschek, V., McAuley, R., Nitschke, C., Rasmussen, A.R., Sanders, K.L., Sheehy, C., Shine, R., Somaweera, R., Sweet, S.S. & Voris, H.K. (2018) Future Directions in the Research and Management of Marine Snakes. Frontiers in Marine Science, 5. 10.3389/fmars.2018.00399

    Crowe-Riddell, J.M., Snelling, E.P., Watson, A.P., Suh, A.K., Partridge, J.C. & Sanders, K.L. (2016) The evolution of scale sensilla in the transition from land to sea in elapid snakes. Open Biology, 6. 10.1098/rsob.160054

    Lillywhite, H.B., Sheehy, I.I.I.C.M., Heatwole, H., Brischoux, F. & Steadman, D.W. (2018) Why are there no sea snakes in the Atlantic? BioScience, 68, 15-24. 10.1093/biosci/bix132

    Murphy, J.C. (2012) Marine Invasions by Non-Sea Snakes, with Thoughts on Terrestrial–Aquatic–Marine Transitions. Integrative and Comparative Biology, 52, 217-226. 10.1093/icb/ics060

    Sanders, K.L., Lee, M.S.Y., Mumpuni, Bertozzi, T. & Rasmussen, A.R. (2013) Multilocus phylogeny and recent rapid radiation of the viviparous sea snakes (Elapidae: Hydrophiinae). Molecular Phylogenetics and Evolution, 66, 575-591. 10.1016/j.ympev.2012.09.021

    Sherratt, E., Rasmussen, A.R. & Sanders, K.L. (2018) Trophic specialization drives morphological evolution in sea snakes. Royal Society Open Science, 5, 10.1098/rsos.172141

    We have great photos provided by Scott Eiper, which we display here with permission (Thanks, Scott!):

    Hydrophis atriceps

    Hydrophis pacificus

    Ventral scales of Aipysurus fuscus

    Shout-outs!

    Darren Naish: @tetzoo

    Dani Rabaiotti: @danirabaiotti

    Dave Hone: @dave_hone

    Hank Green: @hankgreen

    Emma Sherratt: @dremsherratt

    Follow the show and the hosts on social media!

    SquaMates: website • twitter • instagram • facebook

    Mark D. Scherz: website • twitter • instagram • tumblr • facebook • researchgate

    Gabriel Ugueto: website • twitter • instagram • facebook • artwork prints

    Ethan Kocak: website • twitter • tumblr • facebook

    The post SquaMates Ep. 6: Return of the ‘Anoli’ first appeared on SquaMates.


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